| distance | reference number | name | latitude | longitude |
| 31.3 | 2614 | Sacramento, Sacramento River, California | 38.5833 | -121.5 |
| 35.6 | 581 | Clarksburg, Sacramento River, California | 38.4167 | -121.517 |
| 38.8 | 2836 | Snodgrass Slough, Sacramento River, California | 38.275 | -121.487 |
| 40.3 | 1976 | New Hope Bridge, Mokelumne River, California | 38.2333 | -121.483 |
| 46.2 | 3059 | Terminous, South Fork, Mokelumne River, California | 38.11 | -121.498 |
| 46.4 | 263 | Bishop Cut, Disappointment Slough, San Joaquin Rive | 38.0433 | -121.418 |
| 47.3 | 2965 | Stockton, California | 37.9583 | -121.29 |
| 47.5 | 2953 | Steamboat Slough, Snug Harbor Marina, Sacramento Ri | 38.2 | -121.612 |
| 48.8 | 1098 | Georgiana Slough entrance, Mokelumne River, Califor | 38.1267 | -121.578 |
| 48.9 | 3261 | Wards Island, Little Connection Slough, San Joaquin | 38.05 | -121.497 |
| 49.0 | 272 | Blackslough Landing, San Joaquin River, California | 37.995 | -121.422 |
| 50.2 | 2449 | Prisoners Point, San Joaquin River, California | 38.0667 | -121.55 |
| 52.5 | 1304 | Holt, Whiskey Slough, San Joaquin River, California | 37.9333 | -121.433 |
| 53.0 | 1390 | Irish Landing, Sand Mound Slough, San Joaquin River | 38.0333 | -121.583 |
| 53.1 | 2547 | Rio Vista, Sacramento River, California | 38.1467 | -121.69 |
| 55.1 | 3088 | Threemile Slough, Sacramento River, California | 38.1067 | -121.7 |
| 55.1 | 963 | False River, San Joaquin River, California | 38.055 | -121.655 |
| 55.2 | 3087 | Threemile Slough Entrance, San Joaquin River, Calif | 38.0833 | -121.683 |
| 56.4 | 306 | Borden Highway Bridge, Middle River, San Joaquin Ri | 37.8917 | -121.488 |
| 57.0 | 2143 | Orwood, Old River, San Joaquin River, California | 37.9333 | -121.567 |
| 59.1 | 1139 | Grant Line Canal (drawbridge), Old River, Californi | 37.8167 | -121.45 |
| 59.2 | 307 | Borden Highway Bridge, Old River, San Joaquin River | 37.89 | -121.57 |
| 63.4 | 613 | Collinsville, Sacramento River, California | 38.0733 | -121.848 |
| 63.7 | 2066 | Nurse Slough, Bradmoor Island, California | 38.1833 | -121.923 |
| 63.7 | 2067 | Nurse Slough, Bradmoor Island, Suisun Bay, Californ | 38.1833 | -121.923 |